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The Santa Clara Valley Water District directly funded San Francisco Estuary Institute the following studies to inform water resources planning and watershed management efforts:
1. Upper Penitencia Creek Historical Ecology Assessment (Jun 2012)
2. Historical Vegetation and Drainage Patterns of Western Santa Clara Valley: A technical memorandum describing landscape ecology in Lower Peninsula, West Valley, and Guadalupe Watershed Management Areas (2008)
3. South Santa Clara Valley Historical Ecology Study, including Soap Lake, the Upper Pajaro River, and Llagas, Uvas-Carnadero, and Pacheco Creeks (2008)
4. Historical Ecology of South Santa Clara County: Preliminary Findings. A Technical Memorandum to the Santa Clara Valley Habitat Conservation Plan/Natural Community Conservation Plan (2007)
5. Historical landscape ecology of an urbanized California valley: wetlands and woodlands in the Santa Clara Valley (2007)
6. Coyote Creek Watershed Historical Ecology Study: Historical Conditions and Landscape Change in the Eastern Santa Clara Valley, California (2006)
7. Physical and Ecological Characteristics of the Historic Baylands of South San Francisco Bay (Poster for the 2003 State of the Estuary Conference) (2003)